darkbreaker0

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioinformatics_online

Resource list and preparation instructions for online learning and teaching for Bioinformatics

Brainformatics

This Repository is the collection of developing tools and programs potentially used for analyzing single cell NGS data in BI-Harvard Human Brain Project

cheatsheets

scRNA-seq_notes

A list of scRNA-seq analysis tools

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

ctv-AnomalyDetection

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

dca

Deep count autoencoder for denoising scRNA-seq data

DGE_workshop

EphysExtraction

Code to extract electrophysiological parameters of neurons.

For-Data-Science-Beginners

Set of 📝 with 🔗 to help those who are Data Science beginners 🤖

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Intro-to-R-flipped

Intro-to-R-online-Catalyst

Contains materials for an online version of the Introduction to R

liger

Lightweight Iterative Gene set Enrichment in R

modeltime

Modeltime unlocks time series forecast models and machine learning in one framework

napari-training-course

Lectures for a napari training course

NEUBIAS_Academy

neubias_academy_biapy

NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

Onboarding

This repository contains the onboarding resources and exercises that are recommended for when you join the Whitaker Lab.

OrchestratingSingleCellAnalysis

Content for the OSCA Book.

reproducibility-tools

rethinking

Statistical Rethinking course and book package

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scRNA-seq

scRNA-seq_online

seurat

R toolkit for single cell genomics

statistical-rethinking

A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.

Training-modules

Materials for short, half-day workshops

WhitakerLabProjectManagement

This repository contains issues related to the management of all Whitaker Lab projects