dariober's repositories
ASCIIGenome
Text Only Genome Viewer!
cnv_facets
Somatic copy variant caller (CNV) for next generation sequencing
bioinformatics-cafe
Unsorted scripts for bioinformatics
sympy-books
Maths textbook exercises implemented in SymPy
excelToCsv
Command-line exporter of MS Excel files to CSV format
quadratic-programming-deconvolution
A tutorial on quadratic programming for deconvolution of mixed cell populations using R
test-setup-travis
Sandbox to experiment set up scripts with Travis CI
Apollo3-testci
Fork for experimenting with github workflows
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
cancer-variants-pipeline
Pipeline for somatic variant detection from NGS data
companion
A genome annotation tool for more than just protists
DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Fix-OneDrive-Zip
Fix OneDrive Zip files >4Gig
htsjdk-1.141
Fork of htsjdk version 1.141. Mostly for the purpose of adapting it to other projects.
rnaseq-downsample-effect
Effect of downsampling the number of reads on differential gene expression from RNAseq experiments
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-mcl-cluster
Snakemake pipeline for Markov clustering
super-simple-stock
The super simple stock exercise from JPMorgan
test-appveyor
Repository for testing integration with AppVeyor
test-chipseq
Example of a pipeline for processing ChIPseq data
test-ena-query
Python interface to query the European Nucleotide Archive (ENA)