darianyang

wedap

Weighted Ensemble Data Analysis and Plotting

werl

Weighted Ensemble Reinforcement Learning

05Dec2020_UBMS_Workshop

BayesianBootstrap

calc_ca_pcs

capsid_angles

ff15ipq-lig

Scripts for ff15ipq ligand parameter derivation

fluorelax

Calculate relaxation rates of fluorinated biomolecules

ndpredict

NDPredict: ASN (N) Deamidation Predictor

westpa

WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis

crystallin

Data analysis of crystallin MD simulation data

darianyang

darianyang.github.io

My personal website.

eg5

ff15ipq-19F

Scripts and files associated with 19F ff15ipq parameter derivation and validation.

gamd-plot

Additional plotting options for reweighted GaMD simulation data.

gb1-pcs

misc_we

misc we scripts

molecool

A cool molecular visualizer

msm_we

History-augmented Markov analysis of weighted ensemble trajectories.

paramagpy

Calculating paramagnetic NMR effects in proteins

periodic-table

rkif

sasa-spike

traj-plot

Plotting of cpptraj output data.

weer

Weighted Ensemble with Ensemble Refinement

wekap

weighted ensemble kinetics analysis and plotting

wetree

resampling tree visualization for westpa h5 files

wevo

Testing of a WESTPA based REVO implementation