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Daniel Doerr (danydoerr)

danydoerr

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Company:Heinrich-Heine University Duesseldorf

Location:Duesseldorf, Germany

Home Page:http://danieldoerr.de

Twitter:@dany2k

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Organizations
codialab
marschall-lab

Daniel Doerr's starred repositories

MAGA

Language:C++License:AGPL-3.0Stargazers:2Issues:0Issues:0

hpp_pangenome_resources

Stargazers:85Issues:0Issues:0

cactus

Official home of genome aligner based upon notion of Cactus graphs

Language:CLicense:NOASSERTIONStargazers:485Issues:0Issues:0

PanSN-spec

Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes

Stargazers:29Issues:0Issues:0

zellij

A terminal workspace with batteries included

Language:RustLicense:MITStargazers:19600Issues:0Issues:0

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellLicense:MITStargazers:1599Issues:0Issues:0

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

Language:CLicense:NOASSERTIONStargazers:155Issues:0Issues:0

modern-unix

A collection of modern/faster/saner alternatives to common unix commands.

Stargazers:30379Issues:0Issues:0

al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

Language:HTMLLicense:MITStargazers:9970Issues:0Issues:0

BandageNG

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language:C++License:GPL-3.0Stargazers:108Issues:0Issues:0

gfa-wp

Convert GFA W-lines to P-lines

Language:RustLicense:MITStargazers:7Issues:0Issues:0

pggb

the pangenome graph builder

Language:ShellLicense:MITStargazers:343Issues:0Issues:0

GraphAligner

Language:C++License:MITStargazers:250Issues:0Issues:0

founder-sequences

Create a set of founder sequences from a set of multiple-aligned sequences.

Language:C++License:MITStargazers:5Issues:0Issues:0

apples

distance based phylogenetic placement

Language:PythonLicense:GPL-3.0Stargazers:24Issues:0Issues:0

odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

Language:C++License:MITStargazers:184Issues:0Issues:0

rs-gfa

GFA parser in Rust

Language:RustLicense:MITStargazers:28Issues:0Issues:0

rs-handlegraph

Rust implementation of VG handle graph

Language:RustStargazers:18Issues:0Issues:0