danielyao12 / fineRADstructure

A package for population structure inference from RAD-seq data

Home Page:http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html

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README FOR fineRADstructure

For detailed instructions see http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html

A manuscript to cite has been published in MBE: https://doi.org/10.1093/molbev/msy023

1. REQUIREMENTS

Assuming that you are in a Linux/UNIX like environment, you need:
1. an up-to-date version of the gcc compiler, e.g. "gcc (Ubuntu 4.4.3-4ubuntu5) 4.4.3"
2. GNU Scientific Development Library, (libgsl0-dev and libgsl0 in Ubuntu, gsl-devel in OpenSUSE) 
3. Mac/Apple users need to have the Command Line Tools installed

There are probably other requirements which are present on most systems by default.  

2. INSTALLATION

Briefly:

./configure
make

3. FURTHER INFORMATION

This package includes two exacutables: RADpainter and fineSTRUCTURE

RADpainter was written by Milan Malinsky (milan.malinsky@unibas.ch) and fineSTRUCTURE was written by Daniel Lawson (dan.lawson@bristol.ac.uk)

About

A package for population structure inference from RAD-seq data

http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html

License:Other


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