YAO Xin's repositories
Admixture
Step by step guide / scripts for running admixture analyses on SNP data
BIEN_Rarity
Repository for analyses that underlie global rarity manuscript
biodiverse
A tool for the spatial analysis of diversity
brms
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Comp-D_MPI
A program for comprehensive computation of D-statistics and population summaries using MPI
DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
easySFS
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
fineRADstructure
A package for population structure inference from RAD-seq data
GAP_hybpiper_helpers
Helper / wrapper scripts for running Hybpiper2 on NCI Gadi.
genomics_general
General tools for genomic analyses.
hybseq_target_enrichment_workflows
This repository contains instructions and scripts for running the Hybpiper package with orthology inference
learn_python3_spider
python爬虫教程系列、从0到1学习python爬虫，包括浏览器抓包，手机APP抓包，如 fiddler、mitmproxy，各种爬虫涉及的模块的使用，如：requests、beautifulSoup、selenium、appium、scrapy等，以及IP代理，验证码识别，Mysql，MongoDB数据库的python使用，多线程多进程爬虫的使用，css 爬虫加密逆向破解，JS爬虫逆向，分布式爬虫，爬虫项目实战实例等
lettuce2020
Codes for the lettuce resequencing project in 2020
pachyseris
Electronic notebook for "Morphological stasis masks ecologically divergent coral species on tropical reefs" (Current Biology, 2021)
phylotaR
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
popgen-notes
Population genetics notes
presentations
Presentations from the course
python-scraping
Code samples from the book Web Scraping with Python http://shop.oreilly.com/product/0636920034391.do
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
Sanders-workflows
Common workflows used by the Sanders lab
scripts
Scripts for analysis used during the course
speciationgenomics.github.io
Repository for speciation genomics website
SRAssembler
Selective and Recursive local Assembler
stacks_workflow
RADseq workflow built around STACKS
statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
tutorials
机器学习相关教程
tutorials-1
Tutorials on phylogenetic and phylogenomic inference