danielseaton

pytudes

Python programs, usually short, of considerable difficulty, to perfect particular skills.

samplemod

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

rethinking

Statistical Rethinking course and book package

STAR

RNA-seq aligner

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

goatools

Python library to handle Gene Ontology (GO) terms

scRNA.seq.course

Analysis of single cell RNA-seq data course

statements

Successful Job Applications and Grants

deep-learning-genomics-primer

Contains files for the deep learning in genomics primer.

ChromosomeMappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

tftargets

:dart: Human transcription factor target genes from 6 databases in convenient R format.

MIMOSCA

A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.

bedtools-protocols

genetics-sumstat-data

Workflows for processing summary statistics files for Open Targets Genetics

BioFeatureFinder

BioFeatureFinder: Flexible, unbiased analysis of biological characteristics associated with genomic regions

roar

http://www.bioconductor.org/developers/release-schedule/