Daniel Seaton's repositories
circa_pyplot
Plots timeseries data (e.g. gene expression) with circadian or diurnal light/dark bars on the x-axis, using the matplotlib library in Python.
merge_featurecounts
Merge featurecounts outputs across thousands of files.
MMB_exemplar_model
MATLAB code to simulate models used in Seaton, Methods in Molecular Biology, 2016, "ODE-based modeling of complex regulatory circuits".
GeneListDB
Basic scripting to create mySQL database storing Arabidopsis gene lists from publications (e.g. lists of differentially expressed genes in mutants or treatments, lists of promoters identified as bound by ChIP-seq).
limix_tools
Tools for working with the LIMIX linear mixed modelling package.
pufferfish
Yummie deep fried pufferfish
seaton2018_phyA_photoperiod_model
Matlab code to simulate the model of phyA dynamics for "Dawn and photoperiod sensing by phytochrome A", Seaton et al, 2018.