danielecook

Daniel E Cook's starred repositories

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

Language:RustMIT50569 323 601

autocomplete

IDE-style autocomplete for your existing terminal & shell

Language:TypeScriptMIT24359 87 514

memray

Memray is a memory profiler for Python

Language:PythonApache-2.012712 60 170

Awesome-Diffusion-Models

A collection of resources and papers on Diffusion Models

Language:HTMLMIT10276 268 43

numerical-linear-algebra

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

Language:Jupyter Notebook10072 368 15

psst

Fast and multi-platform Spotify client with native GUI

Language:RustMIT8225 49 300

highway

Performance-portable, length-agnostic SIMD with runtime dispatch

Language:C++Apache-2.03719 44 358

uBlock-Origin-dev-filter

Filters to block and remove copycat-websites from DuckDuckGo, Google and other search engines. Specific to dev websites like StackOverflow or GitHub.

Language:PythonUnlicense2214 10 333

tere

Terminal file explorer

Language:RustEUPL-1.21641 5 47

sklearn-porter

Transpile trained scikit-learn estimators to C, Java, JavaScript and others.

Language:PythonBSD-3-Clause1274 33 70

awesome-colab-notebooks

Collection of google colaboratory notebooks for fast and easy experiments

Language:PythonMIT1236 41 6

gget

🧬 gget enables efficient querying of genomic reference databases

Language:PythonBSD-2-Clause875 11 59

tuc

When cut doesn't cut it

Language:RustGPL-3.0808 7 17

sd-webui-colab

A repo for the maintenance of the Colab version of stable-diffusion-webui repo

Language:Jupyter NotebookApache-2.0507 16 28

intel-extension-for-tensorflow

Intel® Extension for TensorFlow*

Language:C++NOASSERTION306 15 62

miniprot

Align proteins to genomes with splicing and frameshift

Language:CMIT305 7 55

IsoSeq

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

BSD-3-Clause-Clear183 200

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

Language:CNOASSERTION154 14 56

alfred-workflow-py3

Full-featured library for writing Alfred 3 & 4 workflows

Language:PythonNOASSERTION145 7 5

echtvar

using all the bits for echt rapid variant annotation and filtering

Language:RustMIT130 4 27

SMURF

Language:Python124 9 4

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

Language:RustMIT113 5 21

cue

Deep learning framework for SV calling and genotyping

Language:Jupyter NotebookMIT94 6 21

giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.

Language:R42 2 57

googapis

Language:RustApache-2.040 2 8

sv-channels

Deep learning-based structural variant filtering method

Language:PythonApache-2.031 5 80

deNovo-Detect

Language:Perl900

boom

bíogo wrapper for libbam - use biogo/hts/bam

Language:CBSD-3-Clause7 40

still

Unit testing for spreadsheets

Language:GoMIT5 2 17

EditPredict

Language:Python400