Dakota Hawkins's repositories
gnn_penn
Repo for becoming familiar with graphical neural networkshttps://gnn.seas.upenn.edu/lectures/lecture-1/
littleballoffur
Little Ball of Fur - A graph sampling extension library for NetworKit and NetworkX (CIKM 2020)
CV
My CV
dakota-hawkins.github.io
Repository for personal Github Pages
urchin_cisTarget
Workflow to generate cisTarget database for urchins
LaPreprint
📝 A nicely formatted LaTeX preprint template
snakemake-workshop
Worklflow managers are good mkay
napari-oif
Napari plugin to read Olympus Image Formats images into napari
EssentialCpp
Exercises and Code from Essential C++ Textbook
tn_test
post-clustering differential expression test
louvain-igraph
Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
snakemake-tutorial
Tutorial for snakemake/computation pipelines for BF528.
python-louvain
Louvain Community Detection
leidenalg
Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.
StatisticalLearning
Repository to learn Julia by implementing algorithms described in "The Elements of Statistical Learning: Data Mining, Inference, and Prediction" Second Edition by Trevor Hastie, Robert Tibshirani, and Jerome Friedman.
AI
Work for CS640 at Boston University
ComputerVision
Repo for CS585 at Boston University
flex
A responsive, flexible, Jekyll theme based on The Development's first design.
FuzzyCliq
For CompBio
TranscriptomeAssemblyTools
A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.
LM_filter_bank_python_code
Python code for generating Leung-Malik (LM) filter bank that is typically used in texture analysis and classification.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
ZIFA
Zero-inflated dimensionality reduction algorithm for single-cell data
MCM2015
Code used during the 2015 Mathematical Competition in Modeling. The code models the spread of ebola through a regional network that accounts for different local and regional vaccination strategies.