dakota-hawkins

yamada

Python implementation of the Yamada-Kataoka-Watanabe algorithm to find all minimum spanning trees in an undirected graph.

EssentialCpp

Exercises and Code from Essential C++ Textbook

intensipy

Normalize intensity values in 3D image stacks

mendel

Genetic Aglorithm framework in Python.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

ComputerVision

Repo for CS585 at Boston University

NCFS

Python implementation of Neighborhood Component Feature Selection (NCFS).

AI

Work for CS640 at Boston University

CV

My CV

dakota-hawkins.github.io

Repository for personal Github Pages

flex

A responsive, flexible, Jekyll theme based on The Development's first design.

FuzzyCliq

For CompBio

gnn_penn

Repo for becoming familiar with graphical neural networkshttps://gnn.seas.upenn.edu/lectures/lecture-1/

LaPreprint

📝 A nicely formatted LaTeX preprint template

leidenalg

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

littleballoffur

Little Ball of Fur - A graph sampling extension library for NetworKit and NetworkX (CIKM 2020)

LM_filter_bank_python_code

Python code for generating Leung-Malik (LM) filter bank that is typically used in texture analysis and classification.

louvain-igraph

Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.

MCM2015

Code used during the 2015 Mathematical Competition in Modeling. The code models the spread of ebola through a regional network that accounts for different local and regional vaccination strategies.

napari-oif

Napari plugin to read Olympus Image Formats images into napari

python-louvain

Louvain Community Detection

snakemake-tutorial

Tutorial for snakemake/computation pipelines for BF528.

snakemake-workshop

Worklflow managers are good mkay

SongAnnotation

StatisticalLearning

Repository to learn Julia by implementing algorithms described in "The Elements of Statistical Learning: Data Mining, Inference, and Prediction" Second Edition by Trevor Hastie, Robert Tibshirani, and Jerome Friedman.

tn_test

post-clustering differential expression test

TranscriptomeAssemblyTools

A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.

urchin_cisTarget

Workflow to generate cisTarget database for urchins

XcodeSettings

ZIFA

Zero-inflated dimensionality reduction algorithm for single-cell data