Dave Bunten's repositories
pycytominer
Python package for processing image-based profiling data
set-website
Website for the software engineering team (SET)
.github-cytomining
A special GitHub repository for setting the Cytomining organization profile and default community health files.
almanac
An open-source handbook of applied guidance and tools for sustainable software development and maintenance.
CellProfiler
An open-source application for biological image analysis
cytomining.github.io
Cytomining organization GitHub Pages configuration.
CytoTable
Transform data for processing image-based profiling readouts with Pycytominer.
CytoTable-benchmarks
Benchmarks for CytoTable and related.
demo-community-health-files
Testing GitHub community health file interactions.
demo-dvc-possible-push-bug
Demonstrating a DVC bug with pushing data to remotes in certain circumstances.
demo-jekyll-spaceship-mermaid-mindmap
Demonstrating a possible bug with Jekyll Spaceship and Mermaid mindmap diagram rendering.
demo-kuzu-rel-table-group-potential-bugs
Demonstrating various potential bugs with Kuzu REL Table Groups
demo-poetry-dynamic-semver-with-docker-hub-push
A demonstrational repository showing how Python Poetry dynamic versioning can be used to distribute Docker container images on Docker Hub for Python packages.
demo-python-memory-reference-accounting
Demonstrating Python memory allocator reference counting and debug.
gc-bucket-em-morphology-tokyo
GCP bucket for EM morphology data collaborations.
RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
rtx-kg2-gateway
Enabling RTX-KG2 data access through various means.
set-effort-analysis
Data analysis on DBMI Software Engineering Team efforts.
set-presentations
A repository for presentations from the DBMI Software Engineering Team (SET)
software-gardening.github
A .github repo for the Software Gardening organization to help manage default community health files, GH actions, and the org profile.
software-gardening.github.io
Base Software Gardening GitHub Pages configuration.
software-landscape-analysis
Enabling software landscape analyses to better understand existing efforts or solutions.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
test-grayskull
Testing functionality with grayskull.
translators
Zotero Translators
wall-of-software
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI