czheluo / Circos-Pipeline

circos pipeline

Circos-Pipeline

This Pipeline was using to Viz the genome variation or others like chord diagram plot for GO and KEGG enrichment analysis result. If you found any bug or any other Viz which you want to add in this pipeline, please feel free to let me know.

Calling Variation (SSR、CNV、SV、SNP、Indels) or annotation GENEs (CDS, EXON) and mRNA

running code

$  perl circos.pipeline.pl -chrlist ref.list -gff ref.gff -outdir ./ -paramlist circos.list

demo1 chord diagram

circRNA

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