vcf '20' field is sometimes malformed
lincoln-harris opened this issue · comments
Lincoln Harris commented
- seeing
0/0:46:46
instead of1/1:0,2:2:6:84,6,0
- relevant when trying to extract AD, in
check_coverage_whole_gene
module - not sure what this edge case means...
- ignoring it for now, with try/except block
Lincoln Harris commented
resolved, with use of pyvcf