czbiohub-sf / cerebra

A tool for fast and accurate summarizing of variant calling format (VCF) files

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vcf '20' field is sometimes malformed

lincoln-harris opened this issue · comments

  • seeing 0/0:46:46 instead of 1/1:0,2:2:6:84,6,0
  • relevant when trying to extract AD, in check_coverage_whole_gene module
  • not sure what this edge case means...
  • ignoring it for now, with try/except block

resolved, with use of pyvcf