lincoln-harris

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioconda-recipes

Conda recipes for the bioconda channel.

boilerplate

cerebra

A tool for fast and accurate summarizing of variant calling format (VCF) files

cerebra-py-notebooks

dont think any of these need to be in the package repo

config

Config and util scripts for doing basic AWS set-up tasks

cookiecutter_test

Example of a cookiecutter python package directory, with argparse

motifScan

Find putative transcription factor binding domains

dummy

fidgit

An ungodly union of GitHub and Figshare

gatk_thresholds

to what extent do GATK HaplotypeCaller read filters effect the output vcfs?

get_barcodes_proj

Grab barcodes and UMIs for a collection of scRNAseq fasta files

latex-cv

code used to generate my cv with latex

latex-moderncv

My latex resume using the moderncv template

LAUD_analysis_poster

Prelim write-up for our single-cell analysis in Lung Adenocarcinoma

lung_NE_pseudotime

Basic scripts/markdowns for clustering and trajectory analysis

mutationalPatterns

implementing mutationalPatterns

mutations-v-coverage_inkling

lets look at the relationship between mutations and coverage

process_new_cells

code for processing new non-immune LAUD cells, 2.27.20

pyPackaging_scratch

can i neatly package all of my variant calling analysis scripts?

python_boilerplate

singleCellClassifier

slitherIn

slithering with cloudKnot

snakemake-beer-proteomics

A Snakemake tutorial workflow using the recent ABRF beer proteomics study.

STAR-Fus_scratch

scratchpad for various STAR-Fusion tasks