Table columns

[Alexander Pico]

• Add "source" as first column
• "term id" does not look correct. It should be values returned as "native" from gProfiler. But keep the column name as "term id"
• remove quotes from values in "description"
• after "p-value" add "query size", "term size", "intersection size", "precision" and "recall"
• after "query size" add "background size" which is called "effective_domain_size" in gProfiler return
• rename "genes" to "intersecting genes"
• rename "p-value" to "adjusted p-value"

[Indraneel Ghosh]

Would fix this in our Friday meeting on the fly. so that I get the order right

[Alexander Pico]

Here's a clearer listing of the columns in order and what they're called in the gProfiler return in parentheses:

• source
• term id ("native")
• term name
• description
• adjusted p-value ("p_value")
• query size
• background size ("effective_domain_size")
• term size
• intersection size
• precision
• recall
• intersecting genes

[Indraneel Ghosh]

Locking this as the final order. Some of this data is not yet populated into the table. Will have to work on populating it onto the table

[Indraneel Ghosh]

@AlexanderPico I think we had agreed on the effective_domain_size being labelled as "#genes" in an earlier meeting. Should I make the change to the background size?

[Indraneel Ghosh]

Closing for now as changes have been made as per suggestions in the comments.

[Alexander Pico]

We have four columns with gene counts. The name #genes is not clear enough. Please use background size

Please update the capitalization of columns names to be consistene, e.g., all lowercase.

[Alexander Pico]

recall does not look correct. It should be values between 0 and 1.

[Indraneel Ghosh]

Found the bug. Closing this.

[Alexander Pico]

Please update the capitalization of columns names to be consistene, e.g., all lowercase.

[Alexander Pico]

Remove 'id' and add 'source'