cwt1

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The Beijing Genomics Institute

cwt1's starred repositories

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

Language:PythonNOASSERTION81338 1743 44161

drawio

draw.io is a JavaScript, client-side editor for general diagramming.

Language:JavaScriptApache-2.040252 586 3639

deeplearningbook-chinese

Deep Learning Book Chinese Translation

Language:TeX35520 2197 201

googletest

GoogleTest - Google Testing and Mocking Framework

Language:C++BSD-3-Clause34023 1222 2227

Coursera-ML-AndrewNg-Notes

吴恩达老师的机器学习课程个人笔记

Language:HTML31261 999 67

ninja

a small build system with a focus on speed

Language:C++Apache-2.010918 267 1019

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

ml

Machine learning tools in JavaScript

Language:JavaScriptMIT2526 87 84

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CNOASSERTION1746 87 1106

DSB2017

The solution of team 'grt123' in DSB2017

Language:PythonMIT1233 58 144

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Language:PythonMIT983 87 3051

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

Language:PythonMIT861 78 7

containers

Bioinformatics containers

Language:DockerfileApache-2.0672 31 288

canu

A single molecule sequence assembler for genomes large and small.

Language:C++652 54 2282

SUPPA

SUPPA: Fast quantification of splicing and differential splicing

Language:PythonMIT251 14 175

Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

Language:JuliaMIT105 12 94

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Language:PythonApache-2.094 16 53

LoReAn

Long Reads Annotation pipeline

Language:PythonMIT70 8 46

NGS

Scripts for next generation sequencing

Language:Python46 130

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

Language:PythonApache-2.040 10 49

DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

Language:PythonGPL-3.036 12 103

juncBASE

Junction Based Analysis of Splicing Events for RNA-Seq

Language:Python30 5 13

minorseq

Minor Variant Calling and Phasing Tools

BSD-3-Clause-Clear15 190

smartas

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Language:Jupyter Notebook14 40

ChopStitch

Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

Language:C++GPL-3.012 15 7

AutoCirc

A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.

Language:PerlNOASSERTION6 30

SpliceGrapher

my folk of http://splicegrapher.sourceforge.net/index.html, modified some functions

Language:Python1 1 1

BioGUI

An open sourced graphical interface for biological and bioinformatics applications written in python

Language:PythonGPL-2.01 10

alternativeSplicingEvents.hg19

Alternative splicing event annotation for Human assembly (hg19)

Language:RNOASSERTION1 20

rMATS-3.2.5

Fixed clone http://rnaseq-mats.sourceforge.net/

Language:Python1 10