Chris Saunders's repositories
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
benchmarking_SV_publication
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
bioconda-recipes
Conda recipes for the bioconda channel.
ExpansionHunter
A tool for estimating repeat sizes
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
hap-eval
A VCF comparison engine for structual variant benchmarking
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
lua-filters
A collection of lua filters for pandoc
manta
Structural variant and indel caller for mapped sequencing data
minimal_cxx
Minimal demonstration of cxx static build issue
pyflow
A lightweight parallel task engine
r4ds
R for data science: a book
rust-wfa2
Rust binding for WFA2-lib
sml_galign
Supporting ortholog scripts from "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."
strelka
Strelka2 germline and somatic small variant caller
truvari
Structural variant toolkit for VCFs
WFA2-lib
WFA2-lib: Wavefront alignment algorithm library v2