ctjsw

ctjsw's starred repositories

An R framework for phylostratigraphy

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Useful bash one-liners for bioinformatics.

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Bioinformatics Workbook repository

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A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

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Phylogenetic orthology inference for comparative genomics

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➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

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Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

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Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

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General pipeline scrips

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The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"

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已不再维护

an R/shiny application for creation of Circos plot interactively

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EasyCodeML: A visual tool for analysis of selection using CodeML

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Convert PowerPoint Slides to xaringan (remark.js) Slides

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