Charles Tapley Hoyt's repositories
unittest-templates
Write less unittest boilerplate
twin-identifier-analysis
How many local unique identifiers overlap between each biomedical vocabulary in the Bioregistry?
biocuration-diversity-search
Find biocurators that aren't from Australia, Canada, USA, or western Europe
bartoc.org
Source code of BARTOC.org user interface
covid19-epidemiology-ontology
Epidemiology and monitoring ontology for COVID-19
CSRGraph
A tiny library for large graphs
drfp
An NLP-inspired chemical reaction fingerprint based on basic set arithmetic.
earth-metabolome-initiative.github.io
The EMI website
embiggen
🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation module processing submodule of the GraPE library.
fairificator
Tool to evaluate how FAIR is a resource URL using the F-UJI API
fairsharing-client
A client to the FAIRsharing API
fairsharing.github.io
The website for FAIRsharing, currently running at https://fairsharing.org.
go-site
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
hoip
Homeostasis imbalance process ontology
lotus-web
Code for LOTUS web
Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
nxontology
NetworkX-based Python library for representing ontologies
obo-nor.github.io
Repo to manage the dashboard for new term requests
obonet
OBO-formatted ontologies → networkx (Python 3)
sbml2hyb
a tool to automatically convert models between HMOD files and SBML format
scholia
Wikidata scholarly profiles
semantic-mapping-vocabulary
https://mapping-commons.github.io/semantic-mapping-vocabulary/
sib-controlled-vocabularies
Controlled vocabularies used in neXtProt - From SIB CALIPHO group; neXtProt project
TDC
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development
the-fair-cookbook
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
therapy-normalization
Services and guidelines for normalizing drug and other therapy terms