ctb

titus-blog

My blog.

2021-snakemake-checkpoints-example

2022-assembly-summary-to-lineages

Convert NCBI assembly_summary files into sourmash taxonomy databases.

magsearch

Workflow and config files for searching (very) large public databases with sourmash sketches

2022-sourmash-sens-spec

Playing around with sens/spec measurements for simulated stuff

2022-database-covers

2022-github-classroom-example

github classroom example

2022-may-cfde-demo

Demo for 2022 may hackathon on downloading and visualizing taxonomy of iHMP data sets.

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

quast

398a470

2021-paper-ibd

2021-paper-metapangenomes

2022-augmented-covers

playing around with graph-augmented minimum metagenome covers

2022-benchmark

benchmarking dib-lab software

2022-bluegenes-sqlite-tax

2022-datalab-affiliates-example1

2022-ggg298-week9

2022-multi-ksize-strain

https://github.com/sourmash-bio/sourmash/issues/267#issue-233190837

2022-pymagsearch

Python wrapper around Rust code for magasearch/sra_search/searcher

2022-sourmash-filter-min-samples

2022-sourmash-rust-countergather

2022-sourmash-scaled-1

2022-sourmash-slow-sig-subtract

Reproduce https://github.com/sourmash-bio/sourmash/issues/2248

AstrobioMike.github.io

Site to help biologists wade their way into bioinformatics.

ogrants

Open grants list

pyo3

Rust bindings for the Python interpreter

pyo3-example

rnaseq-in-the-cloud

rootstock

Clone me to create your Manubot manuscript

tox-setuptools-version

A tox plugin to select your setuptools version