FAstqc DAta PArser - The Easiest way to parse FastQC results.
Check out this iPython Notebook for demo.
1. Recomended way to install is using pip
pip install fadapa
2. Alternatively you can install with esay_install
easy_install fadapa
3. You can also install from Github source code.
cd git clone https://github.com/fadapa/fadapa.git cd fadapa python setup.py install
# import fadapa from fadapa import Fadapa #load file f = Fadapa('/path/to/fastqc_output_file.txt') #get file name print(f.file_name) #get entire content print(f.content()) #get all module names and their status print(f.summary()) #get raw data of any module print(f.raw_module('module name')) #get cleaned data of any module print(f.clean_data('module name'))