VBCF NGS's repositories
illuminasavr
Parses and Plots Illumina SAV files
hinkskalle
OCI + Singularity Container Registry
illuminaBackup
small backup program that copies the important files from illumina sequencing runs
forskaller
simple small API for our superior in house LIMS built by Heinz
surecellumi
extraction of Illumina SureCell UMI protocol. Compatible with umi-tools
forskalle-api
Command Line Interface and Python API for Forskalle
hinkskalle-api
Talking to Hinkskalle
hinkskalle-dev
Development Container for Hinkskalle
SQANTI2
Private repo for Liz's modified SQANTI
swagspotta
Generate typescript + python classes from Swagger/OpenAPI 2 definitions
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
controldna
is a bioinformatics best-practice analysis pipeline for alignment for our control DNA
fadapa
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
Metrix
A Server / Client parser for Illumina InterOp sequencer run metrics written in Java 7.0.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.