Jason Chin's repositories
wavefront-aln
A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
dash13-KIR-MHC-assemblies
Repository for code and small data set for Dash13 Hackathon
starview_app
a quick exercise using three-d library (https://github.com/asny/three-d) visualizing a 3D Spaticial Transcriptom data taset
bioconda-recipes
Conda recipes for the bioconda channel.
burn
BURN: Burn Unstoppable Rusty Neurons
candle
Minimalist ML framework for Rust
candle-gfn
a experimental implementation of GFN in Candle
docker-headless-vnc-container
Collection of Docker images with headless VNC environments
flyte
Kubernetes-native workflow automation platform for complex, mission-critical data and ML processes at scale. It has been battle-tested at Lyft, Spotify, Freenome, and others and is truly open-source.
hdf5-rust
HDF5 for Rust
HumanIdiogramLibrary
Resource of human chromosome schematics & images
llama2.c
Inference Llama 2 in one file of pure C
llm-chain
`llm-chain` is a powerful rust crate for building chains in large language models allowing you to summarise text and complete complex tasks
llm_playground
llm_playground
long-read-pipelines
Long read production pipelines
nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
pgr-tk-notebooks
Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
slivar
genetic variant expressions, annotation, and filtering for great good.
spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
TheHumanPangenome
Creation and Toolsets for a Long-Read Trio Based Human Pangenome