crsky's repositories
5loclung
Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
annotated_deep_learning_paper_implementations
🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
BioRookie_Article
Synchronize the bioinformatics knowledge-sharing content in the WeChat public account to GitHub to facilitate everyone's systematic learning
chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能
COSG
Accurate and fast cell marker gene identification with COSG
dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
figeno
Tool for making genomics figures
networkGWAS
Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype of interest.
Palantir
Single cell trajectory detection
phenonaut
A tool for exploration of multiomic phenotypic space
professional-programming
A collection of learning resources for curious software engineers
SCA
Code Repositories for SCA
scBasset
Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
scDrug
scDrug: From scRNA-seq to Drug Repositioning
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
seqspec
machine-readable file format for genomic library sequence and structure
SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
TwoSampleMR
R package for performing 2-sample MR using MR-Base database