crsky's starred repositories

scikit-learn

scikit-learn: machine learning in Python

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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

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ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

metafor

A meta-analysis package for R

Scissor

Scissor package

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scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

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ggwordcloud

A word cloud geom for ggplot2

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MOVICS

Multi-Omics integration and VIsualization in Cancer Subtyping

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scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

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BioRookie_Article

Synchronize the bioinformatics knowledge-sharing content in the WeChat public account to GitHub to facilitate everyone's systematic learning

dynamo-release

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

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