Colin Davenport's repositories
bionitio-rust
Demonstrating best practices for bioinformatics command line tools
genmap
GenMap - Fast and Exact Computation of Genome Mappability
nf-co.re
Files for the main nf-core website >>>
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
wtdbg2
Important update of wtdbg
blast-example
A basic blast pipeline using nextflow
hpc-intro
Intro to HPC lesson materials
masterBLASTer
A SLURM tool for performing parallel BLAST searches
SplitBlastSlurm
Scripts to multiplex BLAST jobs on a server managed by slurm
goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
nanopolish
Signal-level algorithms for MinION data
bioconda-recipes
Conda recipes for the bioconda channel.
AIControl
Repository for AIControl project
jbrowse
A modern genome browser built with JavaScript and HTML5.
bam-readcount
count DNA sequence reads in BAM files
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
java-genomics-toolkit
Collection of scripts for working with Wiggle files and analyzing sequencing data
galaxy-rna-workbench
Galaxy RNA workbench
galaxy-rna-seq
:whale::bar_chart::books: Galaxy Docker Image to analyse RNA-Seq data
migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
galaxy-hub
Galaxy Community Hub
bigly
a pileup library that embraces the huge
pantools
PanTools v0.1