colindaven

tldraw

SDK for creating whiteboards and canvas experiences on the web.

llama2.c

Inference Llama 2 in one file of pure C

continue

⏩ Continue enables you to create your own AI code assistant inside your IDE. Keep your developers in flow with open-source VS Code and JetBrains extensions

azurechatgpt

🤖 Azure ChatGPT: Private & secure ChatGPT for internal enterprise use 💼

awesome-generative-ai

A curated list of modern Generative Artificial Intelligence projects and services

codeinterpreter-api

👾 Open source implementation of the ChatGPT Code Interpreter

bashplotlib

plotting in the terminal

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

rapidgzip

Gzip Decompression and Random Access for Modern Multi-Core Machines

metagraph

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

wgatools

Whole Genome Alignment Tools

D-SCRIPT

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

Chinese-Pangenome-Consortium-Phase-I

ClairS

ClairS - a deep-learning method for long-read somatic small variant calling

mmlong2

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

splam

✂️ Deep learning-based splice site predictor that improves spliced alignments

HiCAT

HiCAT new project

gffpandas

Parse GFF3 into Pandas dataframes

MERQURY.FK

FastK based version of Merqury

editdistancek

LMS algorithm for computing edit distance with SIMD optimizations

hamming-fasta

brute force online sequence similarity search

ISMB_ECCB_2023_Tutorial-VT2-LLM-For-Protein-Sequence-Analysis

SVsearcher

A method is used to detect SVs from long read alignments

DeepCRE

Deep learning the cis-regulatory code for gene expression in selected model plants

methylasso

A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets

locla

LOCLA: Local Optimization for Chromosome-Level Assembly

cli-generator

Python approach to command line interface and galaxy wrappers automated generation

MOA_Analysis

Mapping MOA reads to diploid genomes