Giters
Clint Valentine (clintval)

clintval

Geek Repo

142

followers

415

following

3k

stars

Company:@fulcrumgenomics

Location:Seattle or Boston

Twitter:@clintcodesbio

Github PK Tool:Github PK Tool

Organizations
bioconda
fulcrumgenomics
r-bioinformatics

Clint Valentine's starred repositories

slidev

Presentation Slides for Developers

Language:TypeScriptLicense:MITStargazers:32457Issues:136Issues:1014

troposphere

troposphere - Python library to create AWS CloudFormation descriptions

Language:PythonLicense:BSD-2-ClauseStargazers:4927Issues:167Issues:916

differential-privacy

Google's differential privacy libraries.

Language:GoLicense:Apache-2.0Stargazers:3017Issues:118Issues:75

pyomo

An object-oriented algebraic modeling language in Python for structured optimization problems.

Language:PythonLicense:NOASSERTIONStargazers:1952Issues:63Issues:1357

poethepoet

A task runner that works well with poetry.

Language:PythonLicense:MITStargazers:1386Issues:10Issues:115

argbash

Bash argument parsing code generator

Language:M4License:NOASSERTIONStargazers:1383Issues:19Issues:122

evo

Biological foundation modeling from molecular to genome scale

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:912Issues:18Issues:46

awacs

Python library for AWS Access Policy Language creation

Language:PythonLicense:BSD-2-ClauseStargazers:396Issues:19Issues:48

rapidgzip

Gzip Decompression and Random Access for Modern Multi-Core Machines

Language:C++License:Apache-2.0Stargazers:356Issues:7Issues:43

rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Language:PythonLicense:NOASSERTIONStargazers:319Issues:19Issues:242

figeno

Tool for plotting sequencing data along genomic coordinates.

Language:PythonLicense:GPL-3.0Stargazers:238Issues:6Issues:16

ContinualLM

An Extensible Continual Learning Framework Focused on Language Models (LMs)

Language:PythonStargazers:237Issues:10Issues:11

scidataflow

Command line scientific data management tool

Language:RustLicense:MITStargazers:190Issues:2Issues:17

odp

oxford dot plots

Language:PythonLicense:GPL-3.0Stargazers:128Issues:5Issues:78

bio-vcf

Smart VCF parser DSL

Language:RubyLicense:MITStargazers:81Issues:8Issues:34

pasta-marker

pasta marker project

Language:PythonStargazers:67Issues:3Issues:1

HLAminer

⛏ HLA predictions from NGS shotgun data

Language:PerlLicense:NOASSERTIONStargazers:51Issues:8Issues:26

nf-LO

A Nextflow workflow to generate lift over files for any pair of genomes

Language:NextflowLicense:MITStargazers:51Issues:3Issues:20

red-bucket

Language:PythonLicense:Apache-2.0Stargazers:43Issues:0Issues:0

snk

Snakemake workflow management system and CLI generation tool

Language:PythonLicense:MITStargazers:29Issues:4Issues:68

ped-sim

Pedigree simulator

Language:C++License:GPL-3.0Stargazers:25Issues:3Issues:14

TidyTree

Uncompromisingly Flexible Phylogenetic Trees in Javascript

Language:JavaScriptLicense:Apache-2.0Stargazers:19Issues:9Issues:29

PRIME

PRedictor of IMmunogenic Epitopes

Language:C++License:NOASSERTIONStargazers:16Issues:1Issues:0

viosnoop

Snoop on Linux VFS I/O using bpftrace

Language:ShellLicense:BSD-2-ClauseStargazers:12Issues:3Issues:1

tool-NFTest

CLI to automate Nextflow pipeline testing

Language:PythonLicense:GPL-2.0Stargazers:11Issues:7Issues:29

gh-action-increment-value

This is a Github Action to increment a value and to commit it automatically.

Language:JavaScriptLicense:MITStargazers:9Issues:2Issues:2

CAST-Seq

CAST-Seq Bioinformatic pipeline

Language:RLicense:AGPL-3.0Stargazers:5Issues:1Issues:4

simple-cloud-accelerator-artifact

Point in time artifact of the Simple Cloud Accelerator project with Third Rock Ventures

Language:TypeScriptLicense:GPL-3.0Stargazers:5Issues:0Issues:0

package-PipeVal

An easy to use CLI tool that can be used to validate different parameters in your NF script/pipeline.

Language:PythonLicense:GPL-2.0Stargazers:5Issues:10Issues:45

semantic-pydantic

Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR

Language:PythonLicense:MITStargazers:4Issues:0Issues:0