clewis7

Caitlin Lewis's starred repositories

altair

Declarative statistical visualization library for Python

Language:PythonBSD-3-Clause8875 140 1931

napari

napari: a fast, interactive, multi-dimensional image viewer for python

Language:PythonBSD-3-Clause2145 46 2957

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Language:PythonGPL-2.0617 46 752

anywidget

jupyter widgets made easy

Language:PythonMIT421 8 94

pygfx

Powerful and versatile visualization for Python.

Language:PythonBSD-2-Clause402 16 348

fastplotlib

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

Language:PythonApache-2.0379 7 317

pynapple

PYthon Neural Analysis Package :pineapple:

Language:PythonMIT247 10 169

deepethogram

Language:PythonNOASSERTION97 8 153

vak

A neural network framework for researchers studying acoustic communication

Language:PythonBSD-3-Clause76 4 487

nemos

NEural MOdelS, a statistical modeling framework for neuroscience.

Language:PythonMIT69 3 120

MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.

Language:PythonGPL-3.058 10 69

mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

Language:PythonNOASSERTION55 4 196

improv

Adaptive Platform for Neuroscience Experiments

Language:PythonMIT35 4 60

collagraph

Collagraph 📓 Reactive user interfaces

Language:PythonMIT28 5 48

mesmerize-viz

Widgets for calcium imaging analysis visualization in notebooks

Language:PythonGPL-3.010 3 31

LINdoscope2023

Notebooks and code for the 2023 EMBO course on imaging and data analysis

Language:Jupyter NotebookMIT900

vidio

simple, performant video reading and writing in python

Language:PythonMIT4 10

SpikeGLX-CPP-SDK

SpikeGLX remote scripting API [C++]

Language:C++NOASSERTION3 1 2

serenity

Realtime analysis & visualization of calcium imaging data

Language:MATLABGPL-3.0100