vocalpy / vak

A neural network framework for researchers studying acoustic communication

https://vak.readthedocs.io

vocalpy/vak Issues

DEV: Adjust lower/upper bounds on other dependencies
Updated 20 days ago
DEV: Bump lower bound on requires-python to 3.10
Updated 20 days ago
MODEL: canary-song-decoder
Updated a month ago
MODEL: Add AVN Similarity
Updated 2 months ago
MODEL: Add Repertoire Embedder
Updated 2 months ago
MODEL: Add SqueakOut
Updated 2 months ago
MODEL: Add voxaboxen
Updated 2 months ago
ENH: Add pre-trained model checkpoints
Updated 2 months ago
ENH: Add datasets module with BioSoundSegBench
Closed 2 months ago1
ENH: Rename `datasets` to `pipes`, that have built-in transforms
Closed 2 months ago2
BUG: Loss and metrics are not logged correctly
Closed 3 months ago1
BUG/CLN: Refactor model abstraction so we don't subclass LightningModel, to fix loss logging
Closed 3 months ago2
BUG: Running lightning with default strategy 'DDP' breaks learncurve function
Closed 3 months ago2
BUG: Predict throws `KeyError`
Closed 3 months ago2
BUG: Running vak 1.0.0a1 with device set to CPU crashes
Closed 10 months ago7
ENH: Add TrainerConfig to train/learncurve/eval/predict
Closed 3 months ago1
Consider switching to keras as engine
Updated 3 months ago
ENH: Add `dataset` sub-table to config file, remove other dataset/transform param keys
Closed 3 months ago1
DEV/ENH: Switch to using tomlkit
Closed 3 months ago
ENH: Make it possible to specify different splits for datasets
Updated 3 months ago
ENH: Add segmentation metrics
Updated 3 months ago
Finish Parametric UMAP model + add datasets
Updated 3 months ago
TST/CLN: Add tests for transforms sub-package
Updated 3 months ago
Out of memory error
Closed 5 months ago2
Error running vak prep
Closed 5 months ago3
Error when running vak prep train.toml
Closed 5 months ago6
BUG: 1. Run the command vak prep gy6or6_train.toml in the terminal
Closed 5 months ago5
BUG/DOC: Tutorial eval and predict configs missing sections with model names
Closed 6 months ago8
chore: release checklist
Updated 6 months ago
Error for duplicate value val_dur in gy6ro6_train.toml from tutorial
Closed 7 months ago3
ENH: check that value for validation step is valid for frame classification models before running learning curve
Updated 8 months ago
ENH: Add post-processing transform to remove short silent gaps
Updated 9 months ago
CLN: Move `vak.common.trainer` into `frame_classification` / have per-model family trainers
Updated 9 months ago
ENH: Have all model families save "best" checkpoint with the same name
Updated 9 months ago
BUG: Getting a warning about missing logger directories
Closed 9 months ago2
BUG: predict raises KeyError when config file is missing `[PREDICT.transform_kwargs]` with `window_size` option
Closed 9 months ago5
ENH: Rename `SegmentErrorRate` -> `CharacterErrorRate`
Closed 9 months ago
BUG: Fix model families to log train loss on step
Closed 9 months ago
ENH: Minimize duplication of data when preparing datasets for frame classification models
Closed 9 months ago1
ENH: Have `vak.predict` accept `post_tfm_kwargs` like `eval` + `learncurve`
Updated 10 months ago
Inconsistent syllable error rate between vak eval and predict
Closed 10 months ago15
ENH: Require that `metrics` for a model definition be a subclass of `torchmetrics.Metric`
Updated 10 months ago3
BUG: Getting a warning about Nvidia Tensor Cores
Updated 10 months ago1
DOC: Make minor doc fixes
Closed 10 months ago
DOC/CLN: revise/fix API docs for 1.0.0
Updated 10 months ago
BUG: `Cannot convert a MPS Tensor to float64 dtype` on Apple M1 Max
Closed 10 months ago3
BUG/MAINT: Have all metrics return tensors
Closed 10 months ago1
TST/CLN: Further clean up / refactor how we generate test data
Updated a year ago
DOC: Better document spectrogram options, e.g. with a how-to + link to API + reference docs
Updated a year ago
ENH: Add ability to specify function/callable to make spectrogram during prep step
Updated a year ago