cjprybol

cjprybol's repositories

reproducibility-via-singularity

A demo and tutorial for how to use git and singularity to make your research more portable and reproducible

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uCSV.jl

A Julia package for reading and writing delimited-text; µ in size, ∞ in flexibility

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foobar_solutions

Jupyter notebooks of some google foobar challenge questions

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ExpectationMaximizationExample

Walkthrough of the example shown in Do, C. B., & Batzoglou, S. (2008). What is the expectation maximization algorithm? Nature Biotechnology, 26(8), 897–899. http://doi.org/10.1038/nbt1406

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Mycelia

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BioSequences.jl

Biological sequences for the julia language

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CV

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Eisenia

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GFF3.jl

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Kmers.jl

In development: Kmer types and methods for julia

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LightGraphs.jl

An optimized graphs package for the Julia programming language

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Neurospora_BSA_mutation_mapper

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pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

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RBP

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sars-cov2-pangenome-analysis

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singularity-testing

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static-demo

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viral-pangenome-discovery

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