Christa Caggiano's repositories
gemBS
GEMBS is a bioinformatic pipeline designed for hightroughput analysis of DNA methylation from whole genome bisulfites sequencing data (WGBS).
R-tutorial
Sample code on making nice graphs in R for friends and fellow graph aesthetic enthusiasts
largest_class_at_brandeis
python script to find the largest classes at brandeis
chalk
Chalk is a high quality, completely customizable, performant and 100% free Jekyll blog theme.
single-cell-worm
The C. elegans transcriptome at single cell resolution
scribble
:tomato: A Jekyll theme.
led-neuron-firing-model
LED neuron firing model developed for arduino as a part of the Brandeis Art Science Initiative
brandeis-art-science-blog
Blog created for Brandeis Art Science Initiative
Circle_RNA
Circle RNA exploration
hrbrthemes
:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components
Rosbash-Lab
Bioinformatic code for research conducted in the Rosbash Lab, Brandeis University.
Computational-Science
Supplements to the Computational Science applied maths course at University College Dublin.
chilin
ChIP-seq DC and QC Pipeline
vaccinator
Remind parents to vaccinate their kids!
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
urban-theme
minimal jekyll theme for visual artists
Working-with-Biological-Data
Visualization and sampling biological data sets in R
Analysis-of-Variance-
Performs an ANOVA on large biological data sets
Biological-Physics-
Uses statistical mechanics to calculate the probability of a transcription factor being bound to a gene as a function of its binding affinity