Chris Allan's repositories
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
CellProfiler
CellProfiler is open-source cellular image analysis software.
bioformats2raw
Bio-Formats whole slide imaging to raw format converter
isyntax2raw
iSyntax to raw format converter
NGFF-Converter
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
omero-blitz
Gradle project containing Ice remoting code for OMERO
omero-certificates
OMERO server certificate management plugin
omero-common
Gradle project containing common utilities for OMERO
omero-ldaptool
Command line tool for working with OMERO and LDAP
omero-model
Gradle project for generating model jar for OMERO
omero-ms-core
OMERO Vert.x microservice core
omero-ms-image-region
OMERO image region Vert.x asynchronous microservice server
omero-ms-thumbnail
OMERO thumbnail Vert.x asynchronous microservice server
omero-pc-steward
OMERO Process Container Steward
omero-server
Gradle project containing main server logic for OMERO
omero-zarr-pixel-buffer
OMERO Zarr Pixel Buffer Implementation
raw2ometiff
Raw format to OME-TIFF converter
tiledb-java-torture
TileDB Java torture test
www.openmicroscopy.org
OME main website
zeroc-ice-py-linux-x86_64
Builds ZeroC Ice Python manylinux2014 wheel packages for Linux x86_64.
zeroc-ice-py-macos-universal2
Builds Zeroc Ice Python wheel packages for macOS universal2 (x86_64 + arm64)
zeroc-ice-py-macos-x86_64
Builds Zeroc Ice Python wheel packages for macOS x86_64