chingman313

ollama

Get up and running with Llama 3.1, Mistral, Gemma 2, and other large language models.

go-ethereum

Go implementation of the Ethereum protocol

taichi

Productive, portable, and performant GPU programming in Python.

alphafold

Open source code for AlphaFold.

OwlCarousel2

DEPRECATED jQuery Responsive Carousel.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

nixtla

TimeGPT-1: production ready pre-trained Time Series Foundation Model for forecasting and anomaly detection. Generative pretrained transformer for time series trained on over 100B data points. It's capable of accurately predicting various domains such as retail, electricity, finance, and IoT with just a few lines of code 🚀.

code_contests

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

alphamissense

1-billion-word-language-modeling-benchmark

Formerly known as code.google.com/p/1-billion-word-language-modeling-benchmark

LinkBERT

[ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links

SpliceAI

A deep learning-based tool to identify splice variants

bio-ner

Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.

llm

The Roadmap for LLMs

pops

Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

esm-variants

SNAF

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

VESPA

VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

gene_features

MLVar

dgidb-v5

Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases

TransDTI

TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow

mastermind-api-cookbook

A collection of example scripts to query the Mastermind Genomic Search Engine API for valuable insight from published evidence.

orphapacket

rCNV

An R package for detecting copy number variants from SNPs data

civic2clinvar

extraction of CIViC variants into the clinvar submission format

NLP_Genomics

Investigating Natural Language Processing from a genomic/metagenomic perspective