Eric's repositories

ATAC_pipeline

a preliminary pipeline to process the .bw file

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CRC-scRNA

Codes for a single cell RNA sequencing data analysis

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Figures

Scripts to draw the pretty or informative figures

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IRLS

Explore best combination of 10 ML algorithm for better prognostic value

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LOHHLA-analysis

a pipeline to run the LOHHLA analysis in batches

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MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

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Rmap2Batch

A rank-based map to capture batch effect in single cell omics

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snnMAP

A variant of UMAP adjusted for single cell omics

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wangyang-pleural-indentation

wangyang-pleural-indentation project

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WGBS_pipeline

a pipeline to process the .bismark.cov.gz file

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MutationCalling

An integrated pipeline for calling mutation from long reads WES sample

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Note

Note about applied statistics

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SpatDistSC

inference and visualization of biological features SPATial DISTribution in Single-Cell omics

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WilmsTME

Celltypes composition quantification of TME in wilms tumors

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