Chaz Reid's repositories
deep-learning-genomics
Deep learning for genomics - a set of Jupyter notebooks.
2019-snakemake-cli
Snakemake workflows as command line utilities
go-rosalind
A Go (golang) package for solving bioinformatics problems.
centillion
main repository: https://github.com/dcppc/centillion
rubiks-cycles
An investigation into permutation cycles and orders for 3x3 and 4x4 Rubiks Cubes.
charlesreid1-githubio-theme
Pelican theme for charlesreid1.github.io
charlesreid1.com-theme
Pelican theme for charlesreid1.com content.
how-do-i-pandoc
🇨🇭 How do I use pandoc, the swiss army knife for documents? https://pages.charlesreid1.com/how-do-i-pandoc
how-do-i-pelican
How do I use pelican to set up a static site? https://pages.charlesreid1.com/how-do-i-pelican
how-do-i-snakemake
🐍 How do I write snakemake workflows? How do I write snakemake rules? What are some common snakemake patterns? How do I write a snakemake command line wrapper? https://pages.charlesreid1.com/how-do-i-snakemake
translate-yer-docs
A pandoc tool to translate yer Markdown docs https://pages.charlesreid1.com/translate-yer-docs
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
b-captain-hook
Captain Hook is a gitea webhook server running flask-gitea-webserver. https://pages.charlesreid1.com/b-captain-hook
continuous-build
Show how to use continuous integration to test your dependency specifications
deconvoluting-convolutions
Deconvoluting convolutional neural networks.
flask-dance
Doing the OAuth dance with style using Flask, requests, and oauthlib.
flask-dance-github
Example app that logs in with GitHub using Flask-Dance
flaskadillo
Materials for the Flask ILLO @ DIB Lab, October 15, 2018.
git-commit-ectomy
Information about performing a git-commit-ectomy correctly. https://pages.charlesreid1.com/git-commit-ectomy/
github-heroku-attack-rabbits
Protect private pages hosted on Heroku by authenticating with Github using Flask-Dance. Also, attack rabbits. https://pages.charlesreid1.com/github-heroku-attack-rabbits
how-do-i-heroku
How do I use heroku? How do I deploy python apps? ruby apps? bots? How do I push to deploy with heroku? How do I set up custom domains with heroku? https://pages.charlesreid1.com/how-do-i-heroku
how-do-i-pyenv
How do I use pyenv to manage multiple python versions? How do I install it? How do I automate installation? https://pages.charlesreid1.com/how-do-i-pyenv/
opensource.guide
Community guides for open source creators
search-demo-mkdocs-material
Demo: make a pile of markdown documents into a searchable, beautiful page with one command. https://pages.charlesreid1.com/search-demo-mkdocs-material
test-binder-conda-jupyter
Testing a binder that runs Jupyter from a Conda environment
the-mission
the mission: a photo essay static site (the mission district, san francisco) https://charlesreid1.github.io/the-mission/
tripos-bot
@math_tripos The Math Tripos Twitter Bot. For weekly math WTF. https://twitter.com/math_tripos
uncle-archie
Uncle Archie is a home-brewed continuous integration server for pull request checks and push-to-deploy functionality. https://pages.charlesreid1.com/uncle-archie