chansigit

spateo-release

Spatiotemporal modeling of spatial transcriptomics

dynamo-release

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

torchode

A parallel ODE solver for PyTorch

sc-toolbox

A collection of project templates and useful functions for single-cell data analysis with Scanpy.

github-hosts

通过修改Hosts解决国内Github经常抽风访问不到,每日更新

awesome-readme

A curated list of awesome READMEs

pytorch-memonger

Sublinear memory optimization for deep learning. https://arxiv.org/abs/1604.06174

MENDER

ml-surveys

📋 Survey papers summarizing advances in deep learning, NLP, CV, graphs, reinforcement learning, recommendations, graphs, etc.

awesome-neural-ode

A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.

scMAE

single-cell-transformer-papers

NVAE

The Official PyTorch Implementation of "NVAE: A Deep Hierarchical Variational Autoencoder" (NeurIPS 2020 spotlight paper)

nvae

An unofficial toy implementation for NVAE 《A Deep Hierarchical Variational Autoencoder》

snopt

Second-Order Neural ODE Optimizer, NeurIPS 2021 spotlight

scMulan

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

tradeSeq

TRAjectory-based Differential Expression analysis for SEQuencing data

scDblFinder

Methods for detecting doublets in single-cell sequencing data

ml-in-cosmology

A comprehensive list of published machine learning applications to cosmology

ai-vocabulary-builder

一个使用了 AI 技术的智能生词本工具，特色功能：自动添加生词、读故事助记单词。

funkyheatmap

Visualising data frames as funky heatmaps 📊

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

wcEcoli

Whole Cell Model of E. coli

py3plex

Py3plex - A multilayer complex network visualization and analysis library in python3

ml-visuals

🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.

KoopmanLab

A library for Koopman Neural Operator with Pytorch.

FreeProxyTor

翻墙-科学上网、免费翻墙、免费科学上网、代理，加速器、一键翻墙浏览器，自用vps，免费v2ray账号/节点，tor，免费自由上网、墙翻、翻墙梯子，电脑、手机、iOS、安卓、windows、Mac、Linux、路由器翻墙、科学上网 ETH:0xf1eF026dCF867de23207F3735C617264A8e6BbaD BTC:bc1q0t5wh2uaefjl0t78ud0yamdula3c6d8f3t32qh

lion-pytorch

🦁 Lion, new optimizer discovered by Google Brain using genetic algorithms that is purportedly better than Adam(w), in Pytorch

awesome-AI4SingleCell

Must-read papers on deep learning based methodology paper for single cell data analysis