Sijie Chen's repositories
hitl-single-cell
Human-in-the-loop Single-cell Analysis
scinterchange
convert single-cell data objects
VeloFusion
VeloFusion coordinates multiple scRNA-seq velocity datasets
AlignmentFreeD2
Python implementation of D2 associated statistics evaluting sequence similarities
Data-Science-Projects
Repository containing data science projects.
dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
dynamo-release
Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
dynamo_readthedocs
deposit tutorials for dynamo readthedocs pages
Growing-Neural-Cellular-Automata
A reproduction of growing neural cellular automata using PyTorch.
meniatlas_code
codes supporting single-cell profiling of human meniscal cells
pretty-print-confusion-matrix
Confusion Matrix in Python: plot a pretty confusion matrix (like Matlab) in python using seaborn and matplotlib
py3plex
Py3plex - A multilayer complex network visualization and analysis library in python3
pytorch-hydra-template
基于pytorch和hydra的模板
pytorch_geometric
Graph Neural Network Library for PyTorch
sc-toolbox
A collection of project templates and useful functions for single-cell data analysis with Scanpy.
scanpy_deg
enhanced DEG analysis in scanpy
spateo-release
Spatiotemporal modeling of spatial transcriptomics
task_vectors
Editing Models with Task Arithmetic
VGAE-PyTorch
This repository shows an implementation of the VGAE based model with PyTorch.