Yin Huang's repositories
Shield
H3K4me3 analysis
ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
GenomicRanges
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GenomicRanges.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GenomicRanges.
rtracklayer
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/rtracklayer.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=rtracklayer.
hill1895
personal website
genomation
R package for genomic feature analysis and visualization
GSEA
gene set enrichment analysis
genbioconductor
Materials for Genomics Data Science: Introduction to Bioconductor
clusterProfiler
:bar_chart:statistical analysis and visulization of functional profiles for genes and gene clusters
ml-class
Machine learning programming exercises
RIPSeeker
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RIPSeeker.html Contributions: http://www.cs.utoronto.ca/~yueli/software.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=RIPSeeker.
CAGEr
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/CAGEr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=CAGEr.
extremely-simple-one-shot-learning
Extremely simple one-shot learning in Python
pyliftover
Pure-python implementation of UCSC liftOver genome coordinate conversion
regmodsbook
A companion book for the Coursera Regression Models class
DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
RedPitaya
Red Pitaya Ecosystem and Applications
PRC2
TF interaction
MACS
MACS -- Model-based Analysis of ChIP-Seq
mamotif
a toolkit
doit
a test
test
test rstudio git
DataScienceSpCourseNotes
Compiled Notes for all 9 courses in the Coursera Data Science Specialization
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
PSAV
PSA Velocity shiny application
STAR
RNA-seq aligner
tophat
Spliced read mapper for RNA-Seq
bx-python
Tools for manipulating biological data, particularly multiple sequence alignments