Rockermeth
Rockermeth is a tool for discovering Differentially Methylated Regions (DMRs).
A detailed description of this methodology is available here
Installation
You can install Rockermeth from github with:
# install.packages("devtools")
devtools::install_github("cgplab/Rockermeth")Generate vignette with:
# install.packages("devtools")
devtools::install_github("cgplab/Rockermeth", build_vignettes = TRUE)If you use this package in your work please cite:
Benelli, M., Franceschini, G.M., Magi, A. et al. Charting differentially methylated regions in cancer with Rocker-meth Commun Biol 4, 1249 (2021). https://doi.org/10.1038/s42003-021-02761-3