caporaso-lab / mockrobiota

A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

http://mockrobiota.caporasolab.us

caporaso-lab/mockrobiota Issues

How can I distinguish those three mock communities from Mock-10 data?
Closed 3 years ago2
Is Mock-1 HiSeq or MiSeq?
Closed 6 years ago2
Mock 11 primers
Closed 6 years ago1
replace QIIME 1 commands with QIIME 2 commands
Updated 6 years ago
Trouble generating a pull request
Closed 6 years ago3
Mock2 expected abundance replication issue
Closed 6 years ago4
add accuracy data and recommendations for mock communities on README
Updated 6 years ago
CONTRIBUTING.md not found
Closed 6 years ago1
Demultiplexing Reverse Reads
Closed 7 years ago5
Question about barcode length in mock2 and mock6
Updated 7 years ago1
Error preprocessing mock 7 and 8 : Failed qual conversion
Closed 7 years ago1
Failing to demultiplex mock-3
Closed 7 years ago3
Potential issue demultiplexing mock-8
Closed 7 years ago2
Shotgun Mock
Closed 7 years ago2
split_libraries_fastq.py error with golay barcodes (mock-5 & -7)
Closed 7 years ago8
new data integrity checks
Updated 7 years ago5
additional mock communities to include
Closed 7 years ago5
Specify reference taxonomy files (e.g., %OTU ID) used for annotation of expected-taxonomy.tsv files
Closed 7 years ago
Unable to replicate community composition of Mock-3
Closed 8 years ago3
Update required metadata
Closed 8 years ago
mock-5 data
Closed 8 years ago3
phenotype data
Closed 8 years ago5
Automatic taxonomy string extraction
Updated 8 years ago
Add code to automatically compile dataset metadata into summary table
Updated 8 years ago1
additional test in check_data_integrity.py
Updated 8 years ago1
Permanent "issues" or notes pages for each mock community dataset
Closed 8 years ago4
mock-7 link to MG-RAST isn't very useful
Closed 8 years ago1
mock-8 raw data needs to be converted to fastq
Closed 8 years ago2
Mock-3 data
Closed 8 years ago5
Mock 10 reverse reads gz is corrupted
Closed 8 years ago3
Incorporate graphical representations of community composition data
Updated 8 years ago
mock-11 metadata is incorrect?
Closed 8 years ago
Mock-11 seems to be listed as B1 and bacterial data, It should be F2 and eukaryotic data
Closed 8 years ago3
add contributing guide
Closed 8 years ago3
make test code pep8 compliant
Closed 8 years ago1
add sample-metadata.tsv validation
Closed 8 years ago
fix expected Silva taxonomy files
Closed 8 years ago2
indicate in human-readable-description the difference between mock-7 and mock-8
Closed 8 years ago
pass through the human-readable-description fields for all metadata
Closed 8 years ago3
correct the precision in expected taxonomy files
Closed 8 years ago3
add raw-data-url for mock-11
Closed 8 years ago2