Christopher Madan's repositories
PSIR
Processing of PSIR data (Philips based)
awesome-MATLAB
A curated list of awesome MATLAB toolboxes, applications, software and resources.
bids-matlab
MATLAB / Octave tools for BIDS datasets
PRML
PRML algorithms implemented in Python
MRIdataviz
Supplementary to "Data visualization for inference in tomographic brain imaging"
MacaqueBlender
A Python library for parametric control of a 3D rigged macaque face model for visual and social neuroscience
grant-open-science
Mozilla Open Science mini-grant
Open-Scholarship-Strategy-site
Website for the Open Scholarship Strategy
Probable-Wordlists
Version 2 is live! Wordlists sorted by probability originally created for password generation and testing - make sure your passwords aren't popular!
vistateach
Matlab tutorials for courses in reading, image science, and MR
stl-toolbox
Visualizing and quantifying movement from pre-recorded videos: The spectral time-lapse (STL) algorithm
jupyter-themes
Custom Jupyter Notebook Themes
brainbrowser-MWE-frames
Minimal BrainBrowser example, BrainBrowser -- https://brainbrowser.cbrain.mcgill.ca
conv_arithmetic
A technical report on convolution arithmetic in the context of deep learning
dmd-neuro
code to compute the Dynamic Mode Decomposition (DMD), adapted for large-scale neural recordings
L1Flattening
An L1 Image Transform for Edge-Preserving Smoothing and Scene-Level Intrinsic Decomposition
fsqc
fsqc is a command line to create images to quality control brain surface reconstructions generated using FreeSurfer.
imbFiles
Supplementary files for "An Introduction to MATLAB for Behavioral Researchers" (Madan, 2014, SAGE Publications)