bwbioinfo

bamsnap

straglr

Tandem repeat expansion detection or genotyping from long-read alignments

nuclei

Fast and customizable vulnerability scanner based on simple YAML based DSL.

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

PDF-Extract-Kit

A Comprehensive Toolkit for High-Quality PDF Content Extraction

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

PureCN

Copy number calling and variant classification using targeted short read sequencing

TEtranscripts

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

multiverse

R package for creating explorable multiverse analysis

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

fastquorum

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

DreamBerd

perfect programming language

warp

A Python framework for high performance GPU simulation and graphics

New-Grad-Positions

A collection of full time roles in SWE, Quant, and PM for new grads.

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

katana

A next-generation crawling and spidering framework.

snipe-it

A free open source IT asset/license management system

dorado-docker-cwl

Repository to build ONT dorado into a docker container and companion cwl file

positron

Positron, a next-generation data science IDE

user-event

🐕 Simulate user events

python-ci

Sample CI setup for Python projects

NextPolish2

Repeat-aware polishing genomes assembled using HiFi long reads

NextPolish

Fast and accurately polish the genome generated by long reads.

omnivore

Omnivore is a complete, open source read-it-later solution for people who like reading.

gitleaks

Protect and discover secrets using Gitleaks 🔑

awesome-scalability

The Patterns of Scalable, Reliable, and Performant Large-Scale Systems

fzf

:cherry_blossom: A command-line fuzzy finder

pdm

A modern Python package and dependency manager supporting the latest PEP standards