Nicholas's repositories
KEGGAPI.jl
Julia API for KEGG
docker-cwl-action
Github Action to test cwl with docker
docker-cwl-template
Template repository for creating containers and cwl run files
list-files-action
List files in a particular directory that follow a pattern
singularity-cwl-action
GitHub Action for singularity and cwl testing.
bbtools-docker-cwl
Docker and CWL for BBtools
BSgenome.Aniger.jgi.nrrl3
Bioconductor genomie package based on the NRRL3 Strain published on JGI
bwbioinfo
Personal Repo
bwbioinfo.dotfiles
A collection of configuration files for first time setups and QoL improvements.
bwbioinfo.github.io
Pages Site
deeptools-docker-cwl
Docker container and cwl tool definition for deeptools.
dorado-docker-cwl
Repository to build ONT dorado into a docker container and companion cwl file
fastqc-docker-cwl
Docker image description and Workflow files for running fastqc
freebayes-docker-cwl
Docker and CWL repository for freebayes
harold-docker-cwl
Docker container and cwl tool definition for harold.
jb2export-docker-cwl
Container for jb2export jbrowse static image generator.
masurca-docker-cwl
Docker Container for running Masurca
minimap2-docker-cwl
Docker container and cwl tool definition for Minimap2.
nanosim-docker-cwl
Docker and CWL repository for Nanosim
pod5-docker-cwl
Container for the pod5 set of tools
pychopper-docker-cwl
Docker container and cwl tool definition for pychopper.
rattle-docker-cwl
Container for RATTLE tool
seqkit-docker-cwl
Docker container and cwl definition for seqkit
wf-gobyqc
Nextflow based QC - London Calling Challenge
wf-rna-seq
RNA seq CWL workflow using custom containers