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brew

🍺 The missing package manager for macOS (or Linux)

Language:RubyBSD-2-Clause4096900

rocker-versioned2

Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.

Language:ShellGPL-2.040800

PowerToys

Windows system utilities to maximize productivity

Language:C#MIT11010100

rclone

"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

Language:GoMIT4644500

ghidra

Ghidra is a software reverse engineering (SRE) framework

Language:JavaApache-2.05089600

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Language:PythonApache-2.03008700

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

Language:HTMLCC0-1.011122900

cal.com

Scheduling infrastructure for absolutely everyone.

Language:TypeScriptNOASSERTION3164600

coolify

An open-source & self-hostable Heroku / Netlify / Vercel alternative.

Language:PHPApache-2.03225000

cli

GitHub’s official command line tool

Language:GoMIT3685400

whisper

Robust Speech Recognition via Large-Scale Weak Supervision

Language:PythonMIT6837500

plane

🔥 🔥 🔥 Open Source JIRA, Linear, Monday, and Asana Alternative. Plane helps you track your issues, epics, and product roadmaps in the simplest way possible.

Language:TypeScriptAGPL-3.02950400

obsidian-google-calendar

Add Google Calendar inside Obsidian

Language:TypeScriptGPL-3.037000

protein_gibbs_sampler

Gibbs sampling for generating protein sequences

Language:PythonMIT4600

synteny

A Nextflow pipeline for running synteny analysis.

Language:PerlNOASSERTION1200

nallo

A long-read (PacBio and ONT) analysis pipeline written in Nextflow

Language:NextflowMIT1300

bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Language:RGPL-3.018200

Badread

a long read simulator that can imitate many types of read problems

Language:PythonGPL-3.016800

gsDesign2

Group Sequential Design Under Non-Proportional Hazards

Language:RGPL-3.01900

datacore

Work-in-progress successor to Dataview with a focus on UX and speed.

Language:TypeScriptMIT139600

HapCUT2

software tools for haplotype assembly from sequence data

Language:CBSD-2-Clause20200

T2T-Polish

Evaluation and polishing workflows for T2T genome assemblies

Language:ShellNOASSERTION10200

cocktails-demo

A shiny app for cocktail ideas

Language:R800

STAARpipeline

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

Language:RGPL-3.05900

isoseq

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Language:NextflowMIT2800

obsidian-day-planner-og

An Obsidian plugin for day planning and managing pomodoro timers from a task list in a Markdown note.

Language:TypeScriptMIT10700

cell-economy-models

Cellular economy models for simulation of biological optimizaton problems

Language:PythonGPL-3.0400

genomeassembly

Implementation of ToL genome assembly workflows

Language:NextflowMIT1900

GEKKO

GEKKO Python for Machine Learning and Dynamic Optimization

Language:PythonNOASSERTION59400

ix-eda-llm

Using large language models for exploratory data analysis

Language:Jupyter NotebookApache-2.0700