Beast code in Giters

bsungwoo's repositories

spSeudoMap

spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

Language:Jupyter Notebook9 1 2

STopover

capturing spatial colocalization and interaction in the TME using topological analysis in spatial transcriptomics data

Language:Jupyter NotebookNOASSERTION2 2 2

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

Language:PythonApache-2.0000

diffxpy

Differential expression analysis for single-cell RNA-seq data.

Language:PythonBSD-3-Clause000

NSForest

NSForest_test

Language:Jupyter NotebookMIT000

pubmed_search

Parallelized search for keywords in PubMed with beautifulsoup

Language:Python010

sceasy

A package to help convert different single-cell data formats to each other

Language:RGPL-3.0000

StainTools

Tools for tissue image stain normalisation and augmentation in Python 3

Language:PythonMIT000

STquantool

ST analysis tool to visualize and quantify multiple datasets

Language:RNOASSERTION000