bschiffthaler

Bastian Schiffthaler's repositories

BatchMap

Fork of OneMap for fast computation of high density linkage maps

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gofer2

Gofer2 - GSEA as a service

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ngs

Source for building the bschiffthaler/ngs docker

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fastxio

No BS FASTA/Q input/output and other operations

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TranscriptomeAnnotation

Presentation for transcriptome annotation

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heimdall

Enrichment query server in Rust/Redis/MySQL

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libbs

C++ utility functions for use anywhere else

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bioconda-recipes

Conda recipes for the bioconda channel.

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gni_predictors

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gofer3

Database-backed rewrite of gopher2

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htslib

C library for high-throughput sequencing data formats

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loafer

Node.js/Express.js front end for Gofer2

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nf-tnseq

Nextflow pipeline for transposon sequence analysis

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PseudoAlignment

Pseudo alignment lecture

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RAFFT

C++ translation of original matlab code for RAFFT (Recusive alignment by FFT)

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ragnaproc

UPSCb monitor daemon to terminate executables that run on the login node

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ranger

A Fast Implementation of Random Forests

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reveal.js

The HTML Presentation Framework

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seidrfile-python

Python bindings to work with SeidrFiles

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seidrfile-r

R bindings to work with SeidrFiles

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toolbox

Misc. useful small programs

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TranscriptomeAssembly3

Presentation for 3rd gen transcriptome "assembly"

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TranscriptomeEvaluation

Presentation about transcriptome evaluation

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