bschiffthaler

kogia

Docker containers for bioinformatics with a small footprint

BSlogger

Very simple C++ logging class

mkname

Command line utility to create Ubuntu/Docker-like adjective-name pairs

nf-radseq

NextFlow pipeline for RAD-Seq analyses

seidr

Toolkit to create crowd networks

aspen-v2

Public scripts for the second version of the European aspen assembly

fdeb

Force-directed edge bundling

fg-course

Functional Genomics course website

Linux-Advanced-Interactive-Bash

Presentation for advanced interactive bash

Linux-Bash-Scripting

Presentation about Bash Scripting

Linux-Environment

Presentation for Linux env

Linux-Filesystem

Presentation about FS basics in Linux

Linux-Intro

Presentation for Linux Introduction

Linux-IO

Presentation about linux I/O

Linux-SLURM

Presentation about SLURM

Linux-Terminal-Shell-SSH

Presentation for Linux basics

nf-modules

Generic nextflow modules

nf-pseudopipe

Nextflow pipeline to run pseudopipe

Pathway-Enrichment

Pathway-Enrichment-Exercises

presentation-template

Reveal template

QC

Presentation about FASTQ input QC

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

scRNA-Seq

scRNA-Seq lecture

scRNA-Seq-Exercise

scRNA-Seq Exercise

seidr-manuscript

Public code related to the seidr manuscript

Slides

Various Reveal JS presentations

specdtw

Chromatogram spectrum DTW implementation

TranscriptomeAssembly

Transcriptome assembly presentation

transrate

Understand your transcriptome assembly