Design of experiments (DoE) and machine learning packages for the iCFree project
Python 3.8+
conda env create -n <env_name> icfree
conda activate <env_name>iCFree is a package and is only runnable through the modules below.
This module generates a list of values for all parameters given in the input file. The values are generated using a Latin Hypercube Sampling (LHS) method. The number of values generated is given by the user and the values are saved in csv or tsv file.
The LHS values are generated using the lhs function from the pyDOE package and binned into bins to reduce the combinatorial space.
Documentation can be found in icfree/sampler/README.md file.
The plates_generator module works with volume values as input. This converter module converts concentration values into volume values.
Documentation can be found in icfree/converter/README.md file.
This module generates a list of source and destination plates according to the set of samples to test.
Documentation can be found in icfree/plates_generator/README.md file.
The module generates a list of instructions to perform the experiment.
Documentation can be found in icfree/instructor/README.md file.
Display help by running:
python -m icfree.<module> --helpJoan Hérisson, Yorgo EL MOUBAYED
Released under the MIT licence. See the LICENSE file for details.